+ Nature Reviews Genetics article on "Illuminating the dark side of machine learning"
May 2019

+ Cell Leading Edge Preview article on "Antibiotic Lethality Is Impacted by Nutrient Availabilities: New Insights from Machine Learning"
May 2019

+ Engineers Journal article on "Painting a fuller picture of how antibiotics act"
May 2019

+ World Economic Forum article on "Machine learning could help make antibiotics more effective"
May 2019

+ MIT News article on "Painting a fuller picture of how antibiotics act"
May 2019

+ Science Perspective article on "Synthetic transcriptional synergy"
May 2019

+ Technology Networks article on "Digital Signal Processing - Now in Living Cells!"
April 2019

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Featured Publications

+ Yang JH, Wright SN, Hamblin M, McCloskey D, Alcantar MA, Schrübbers L, Lopatkin AJ, Satish S, Nili A, Palsson BO, Walker GC and Collins JJ. A white-box machine learning approach for revealing antibiotic mechanisms of action. Cell 177: 1649–1661 (2019). [pdf file]

+ Bashor CJ, Patel N, Choubey S, Beyzavi A, Kondev J, Collins JJ and Khalil AS. Complex signal processing in synthetic gene circuits using cooperative regulatory assemblies. Science 364: 593–597 (2019). [pdf file]

+ Collins JJ. Altered metabolic states. Cell Metabolism 29:509 (2019). [pdf file]

+ Stokes JM, Gutierrez A, Lopatkin AJ, Andrews IW, French S, Matic I, Brown ED and Collins JJ. A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria. Nature Methods 16: 303-306 (2019). [pdf file]

+ Kong W, Meldgin DR, Collins JJ and Lu T. Designing microbial consortia with defined social interactions. Nature Chemical Biology 14: 821-829 (2018). [pdf file]

+ Yeo NC, Chavez A, Lance-Byrne A, Chan Y, Menn D, Milanova D, Kuo C, Guo X, Sharma S, Tung A, Cecchi RJ, Tuttle M, Pradhan S, Lim ET, Davidsohn N, Ebrahimkhani MR, Collins JJ, Lewis NE, Kiani S and Church GM. An enhanced CRISPR repressor for targeted mammalian gene regulation. Nature Methods 15: 611-616 (2018). [pdf file]

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